Russell L. Malmberg LumberJack
Professor of Plant Biology, also Appointed in Genetics
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Research Software Colleagues Windsurf
Selected Biology Software
Written by or compiled by members of the Malmberg lab.
  • If you find any of these programs useful, please send me an e-mail to encourage me to maintain this collection.
  • The programs not written by Russell L. Malmberg or a member of the Malmberg lab are being distributed here with the permissions of the authors.
  • See the disclaimer at the bottom of this page.
  • Also, see our RNA Informatics web site.
Program Link
Info		 Zip
Size		 OS
CPU		 GUI
CL		 Program Description
Author / Source
Lumberjack
Java
24-Aug-04		 900 kb Java
Linux		 CL A utility for analyzing the phylogenetic signal in regions of multiple sequence alignments.
Carolyn Lawrence
RNApasta
Java
18-Apr-08		 225 kb Java
MS Windows, Linux		 GUI A utility for collecting statistics from aligned and structurally annotated RNA sequences. This was compiled with java SDK 1.6. If you have a different version of Java, try compiling from the source, which is available here.
Russell L. Malmberg
Trbls 0.6
intel
7-Jul-99		 850 kb MS Windows
x86		 GUI Blast search accessory program: schedules runs of multiple sequences
Russell L. Malmberg
Peaks 0.9
intel
2-Jun-01		 330 kb MS Windows
x86		 GUI Displays and integrates data files from HPLC or similiar lab equipment
Russell L. Malmberg
MapMaker, QTL 3.0b
intel
25-Apr-97		 490 kb MS Windows
x86		 CL Constructs genetic linkage groups and maps QTL loci
Stephen Lincoln, Mark Daly, Eric Lander
Whitehead Page
Molphy 2.2
intel
18-May-96		 250 kb MS Windows
x86		 CL Phylogenetic analysis programs including ProtML
Jun Adachi, Masami Hasegawa
Molphy site

Disclaimer: NO WARRANTY

This software was created in the course of academic and/or research endeavors and not as a commercial package. Its present version (which may still be in development) is distributed for a nominal fee to cover the cost of distribution and administrative costs, "AS IS, WITH ALL DEFECTS." By using the software, each user agrees to assume all responsibility for any and all such use. The author(s) and University of Georgia are not aware that the software or the use thereof infringe any proprietary right belonging to a third party. However, NO WARRANTY OR REPRESENTATION OF ANY KIND, EXPRESS OR IMPLIED, is made about the software, including without limitation any warranty of title, noninfringement, merchantability, or fitness for a particular purpose, by the author(s) or by University of Georgia.

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