| 1 |
Tue 13 Aug |
Introduction |
Malmberg, Leebens-Mack |
| 2 |
Thr 15 Aug |
Unix, Linux, Command-Line |
Malmberg |
| 3 |
Tue 20 Aug |
Lab - Command-Line, Local Resources |
Yecheng Huang |
| 4 |
Thr 22 Aug |
NCBI, Blast, Entrez |
Malmberg |
| 5 |
Tue 27 Aug |
Databases |
Malmberg |
| 6 |
Thr 29 Aug |
File Formats, HTML XML, Ontologies |
Malmberg |
| 7 |
Tue 3 Sep |
Lab - Genome Browsers |
Malmberg |
| 8 |
Thr 5 Sep |
Scoring Matrices |
Malmberg |
| 9 |
Tue 10 Sep |
Two Sequence Alignments, Database Choices due |
Malmberg |
| 10 |
Thr 12 Sep |
Multiple Sequence Alignments I |
Malmberg |
| 11 |
Tue 17 Sep |
Lab - Multiple Sequence Alignments |
Malmberg |
| 12 |
Thr 19 Sep |
Pseudocounts & Motifs |
Malmberg |
| 13 |
Tue 24 Sep |
Sensitivity & Specificity, Markov Models |
Malmberg |
| 14 |
Thr 26 Sep |
Structure Prediction |
Malmberg |
| 15 |
Tue 1 Oct |
Lab - Structure Prediction, Exam 1 given |
Malmberg |
| 16 |
Thr 3 Oct |
Multiple Sequence Alignments II |
Leebens-Mack |
| 17 |
Tue 8 Oct |
Phylogenetic Trees, Exam 1 due |
Leebens-Mack |
| 18 |
Thr 10 Oct |
Phylogenetic Trees |
Leebens-Mack |
| 19 |
Tue 15 Oct |
Phylogenetic Trees |
Leebens-Mack |
| 20 |
Thr 17 Oct |
Lab - Phylogenetic Trees |
Leebens-Mack |
| 21 |
Tue 22 Oct |
Molecular Evolution |
Leebens-Mack |
| 22 |
Thr 24 Oct |
Molecular Evolution |
Leebens-Mack |
| 23 |
Tue 29 Oct |
Sequence Assembly |
Leebens-Mack |
| 24 |
Thr 31 Oct |
Transcriptomes |
Leebens-Mack |
| 25 |
Tue 5 Nov |
Read Mapping |
Leebens-Mack |
| 26 |
Thr 7 Nov |
Read Mapping, Database web pages due |
Leebens-Mack |
| 27 |
Tue 12 Nov |
Gene Ontologies and Pathways |
Leebens-Mack |
| 28 |
Thr 14 Nov |
Lab Sequence Assembly |
Leebens-Mack |
| 29 |
Tue 19 Nov |
Database Reports |
Graduate Students |
| 30 |
Thr 21 Nov |
Database Reports, Exam 2 given |
Graduate Students |
| |
Tue 26 Nov |
~~ Thanksgiving Holiday ~~ |
| |
Thr 28 Nov |
~~ Thanksgiving Holiday ~~ |
| |
Tue 3 Dec |
"The University shall operate a Friday class schedule on Tuesday, Dec. 3." |
| PS2 |
|
Exam 2 due |