IN THE NEWS.
From time to time I will post articles from the popular press that pertain to plant biology, or biology in general. I will also ask thought provoking questions at the end of each article. I will NOT hold you responsible on exams for this material, UNLESS OTHERWISE STATED. One of my goals is to get you to critically read more about science related material in the press. There's a lot of bogus stuff and hype out there; the best way to guage what you hear and read about is to apply the time tested methods of science -- namely, a rational, evidence based approach. To paraphrase Cuba Gooding in the movie 'Jerry McGuire', 'Show me the data!'. I hope you take advantage of this opportunity to apply what you learn in class to what you read and hear about in the media, a lot of which DIRECTLY APPLIES TO YOU. In other words, become a more informed citizen! The items will be posted in order, with the most recent first.

I ENCOURAGE ALL OF YOU TO READ NEWSPAPERS, MAGAZINES AND NEWS WEBSITES REGULARLY.
STAY INFORMED!!!

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- Uncle Charlie on the Internet!
- Mickey's on a diet
- Going batty over biodiversity
- The veggie-industrial complex
- US population set to pass 300 megapeople
- Decaf coffee not so lo octane
- Now, lettuce!!
- Mean veggies
- GENE TRANSCRIPTION EARNS NOBEL PRIZE IN CHEMISTRY
- Big Bang earns Nobel Prize in physics
- Another win for Uncle Charlie
- Latest E. coli outbreak over, but food safety still a concern (2 articles)
- New life for DDT in war against malaria
- Escaped biotech rice a profit killer
- Escaped biotech rice illegal, but safe, says EU
- Popeye would be mortified: 2 articles
- First tree genome sequenced
- MI to make new HPV/cervical cancer vaccine manditory?
- Cancer's complex genetics
- Western fires worst in 50 years
- New boid discovered in India
- CRIKEY!! Two appreciations, and a dissent
- Plants take path to biodiversity
- It's the DNA, stupid (2 articles)
- Drought shrivels crops in heartland
- Does science leave a sour taste in your mouth? Now we know why!
- Sorry dear, not tonite. I have a laptop....errr, headache
- Feds pick on evilution again, this time re student grants
- Hear harps after heart surgery? It's not angels
- Feds worry about smoking rope; CA laughs
- Po' Pluto, and a lesson in the way science works
- New method to obtain embryonic stem cells
- Plan B approved
- Watch those contacts!
- Gluten, and why some of us can't stand it
- Yay, we top Turkey!!
- Frankengrass on the loose
- More evilution in action: antibiotic resistant TB
- Jo as health food
- Ozone hole harder to repair
- Wither stem cells?
- Corpse flower (Titan Arum) blooms in Brooklyn
- The latest on migraines
- An urban garden, and some philosophy

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Charles Darwin's work evolves on Web

CNN.com; 10/19/06
CAMBRIDGE, England
-- Charles Darwin's work has evolved into cyberspace with the launch of an online archive on Thursday.

The creators of www.darwin-online.org.uk say that the archive is not yet complete, and manuscripts and other material will be added over the next two years.

Much of the material comes from the Darwin Archive housed at Cambridge University.

"The idea is to make these important works as accessible as possible; some people can only get at Darwin that way," said project director John van Wyhe, a researcher at Christ's College, Cambridge.

"Most of the materials provided are appearing online for the first time," he added.

These include the first edition of the "Journal of Researches" (1839) (or "Voyage of the Beagle"), "The Descent of Man" (1871), "The Zoology of the Voyage of HMS Beagle" (1838-43) and the 2nd, 3rd, 4th and 5th editions of the "On the Origin of Species."

The site also includes manuscripts and notebooks.

"One of these, the notebook in which Darwin recorded his immediate thoughts on the Galapagos, was stolen in the early 1980s and is still missing, but the text has been transcribed from microfilm," van Wyhe said.

The Web site also includes the largest Darwin bibliography yet produced, and the largest catalogue of manuscripts with over 30,000 entries, van Wyhe said.

"As vast as the collection now is, there is much still to come," he added.

"The site currently contains about 50 percent of the materials that will be provided by 2009, the bicentenary of Darwin's birth and the 150th anniversary of the publication of 'The Origin of Species."'

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Disney to Cut Back on Junk-Food Marketing
Theme Parks to Serve More Healthful Items; Critics Call for Additional Changes

By Annys Shin
Washington Post, October 17, 2006

These days, the first stop a blockbuster movie makes after the box office is a supermarket shelf. Johnny Depp's mug peers out from a "Pirates of the Caribbean" cereal box. In the next aisle, the Incredibles hawk Incrediberry Blast Pop Tarts. But they may not be there next year.

The licensing rights for "Pirates of the Caribbean" and "The Incredibles" belong to the Walt Disney Co., which said yesterday that it plans to change its policy and use its characters to market foods to children only for products that meet certain nutritional guidelines.

In doing so, Disney joins food and beverage makers in addressing concerns that they contribute to higher rates of childhood obesity by encouraging children to eat unhealthful foods. Last year, Kraft Foods Inc. said it would stop advertising less-nutritious products on television, radio and in magazines aimed at kids under 12. Earlier this month, Kraft joined several snack food makers in an effort to sell more healthful treats in schools.

"These are the first steps in an initiative that will evolve over time," Disney president and chief executive Robert A. Iger said in a written statement.

At least one other media conglomerate has made similar efforts. Nickelodeon Networks, part of Viacom Inc., licenses characters to sell less-nutritious items such as ice cream and cookies. About a year ago, it began partnering with produce companies, putting SpongeBob SquarePants on spinach packages and Dora the Explorer on bags of organic soybeans, spokesman Dan Martinsen said.

Under the new guidelines, Disney characters will be used to market foods only in which fat does not exceed 30 percent of the calories in main dishes; saturated fat does not exceed 10 percent of calories; and added sugar does not exceed 10 percent of calories for main and side dishes, and 25 percent for snacks.

The guidelines will apply to 60 percent of Disney-licensed products, said finance chief Thomas O. Staggs. The company made an exception for special-occasion sweets, such as birthday cakes and seasonal candy, but plans to eliminate trans fats from such products and to limit the number of indulgence items to 15 percent of its licensed products by 2010.

The guidelines were developed with the help of child-health experts James O. Hill, director of the Center for Human Nutrition at the University of Colorado; and Keith Thomas Ayoob, associate professor of pediatrics at the Albert Einstein College of Medicine.

Starting this month, Disney is also changing children's meals at its theme parks by including water or low-fat, 100 percent fruit juice with side dishes such as applesauce or carrots in place of soft drinks and french fries. Parents who want soda or fries will have to request them.

Disney test-marketed 20,000 of the more healthful meals and found that as many as 90 percent of parents stuck with the more nutritious option, Staggs said.

Disney also plans to eliminate trans fats from all food served at its parks by 2007, including food served by outside chains, such as McDonald's. Trans fats would also be removed from all licensed and promotional products by 2008. The timing is dictated by contractual agreements, the company said.

Critics of children's advertising largely praised Disney but said the company could do more.

"The mouse has made a major step forward," said David Britt, former chief executive of Sesame Workshop, who contributed to a 2005 Institute of Medicine report that said food and beverage advertising enticed children to eat poorly.

While praising Disney, Britt added that the company did not address its presence on the Internet or radio. Other critics said the company needs to stop running ads for unhealthful foods on ABC, which airs cartoons on Saturdays and on its cable networks.

"It's a great first step, but it can't be their last. They also need to address their television advertising," said Margo Wootan, director of nutrition policy at the Center for Science in the Public Interest.

"They need to stop advertising junk food on their television stations and on ABC," said Susan Linn, co-founder of Campaign for a Commercial-Free Childhood.

Disney officials said before it makes any changes to its advertising, it is awaiting guidelines being developed by the Children's Advertising Review Unit of the Council of Better Business Bureaus, an industry self-regulatory group.

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Mexican Bats Find Cross-Border Benefactors

By Ceci Connolly
The Washington Post, October 16, 2006

MEXICO CITY -- Shortly before sundown they make their first foray, cruising up to 5,000 feet aboveground in search of mosquitoes, moths and other tasty treats. A few hours later, they return home to rest and feed their young before heading out again around midnight.

By daybreak, when Mexican free-tailed bats finally return to their cave, named Cueva de la Boca, the colony will have traveled as far as 62 miles and gobbled some 12 tons of bugs out of the skies near the U.S. border. And in cornfields from Texas to Iowa, farmers are giving thanks.

Or at least they should be.

Sure, bats are creepy. They hang upside down, squeal at high decibels and turn up in movies as blood-sucking fiends. Some even spread rabies. But, it turns out, that in the global ecosystem, bats are humanity's allies.

Every night, all night, as humans sleep, the flying mammals work feverishly. They pollinate plants such as the agave, the source of Mexico's iconic tequila. Their excrement, called guano, is a valuable fertilizer. And bats eat up to one-quarter of their body weight in insects every night, making them one of the simplest, safest, most cost-effective forms of pest control available.

Somehow, that message has not reached most people. For decades, intentionally or otherwise, property owners, hikers and sightseers have trampled habitat, dumped garbage and set fires, decimating the bat populations in many parts of the world.

"We scientists missed a chance to give farmers the right information in the right way at the right time," said A. Nelly Correa, a bat expert at the Center for Environmental Quality at the Monterrey Institute of Technology in Mexico. "Most of us were too busy giving the information to our peers in journals and not to the people who could be our partners."

Bat Lovers Take Action

Now, in a unique cross-border alliance, bat lovers have embarked on a multiyear effort to quantify the damage and replenish the bat population of northern Mexico. The project, being spearheaded by the nonprofit Texas-based Bat Conservation International (BCI), includes detailed mapping of hundreds of present and former bat roosts, educational programs for farmers and even purchases of land to protect the most vulnerable colonies.

In late September, armed with BCI data, the Mexican environmental group Pronatura Noreste bought the Cueva de la Boca cave outside Monterrey for about $500,000. It is believed to be the first purchase of a bat cave by Mexican conservationists, said Magdalena Rovalo, a biologist and director of the organization. Access is now limited to researchers, and plans are underway to build an observation tower in the hopes of generating tourism revenue at the cave, which takes its name from the Spanish word for "mouth."

"If we had a healthy population of bats, we would have pest control and healthy crops at no cost to society and no bad effects on health," Correa said. "And it would be a plus for the economy as bats can become a tourist attraction."

Scientists have identified more than 1,000 species of bats worldwide, representing about one-fourth of all mammal types. Latin America is home to 290 species, 140 of them in Mexico, making the region one of the most diverse bat habitats on the globe. Of all those bats, just two species feed on wild bird blood and only one eats cattle blood, said Correa, who tries at every opportunity to disabuse the public of those blood-sucking stereotypes.

"They have given all bats a bad image very unfairly," Correa said. "Bats are really great guys!"

Cueva de la Boca caught the attention of conservationists after researcher Arnulfo Moreno surveyed 10 major publicly accessible caves in northern Mexico and found that the bat population had fallen by 90 percent in five of them.

"They are especially vulnerable when they are concentrated in a single place and only produce one pup a year," said Moreno, who is based at the Technological Institute of Victoria City in Monterrey. In addition, Boca is a "maternity cave," where young pups were being suffocated to death by smoke from the torches that hikers fashioned with halved plastic bottles and old rags.

"If you're an adult bat and you cannot breathe, you just fly away," Correa said. "If you are a newly born baby bat waiting for your mom to feed you, you just fall down and die."

A Shrunken Population

At one time, Cueva de la Boca was home to an estimated 20 million Mexican free-tailed bats, known to scientists as Tadarida brasiliensis . By last year, the colony had shrunk to 600,000. Pug-nosed, with a wrinkly lower lip and long, loose tail, the bats prefer warmer climes, choosing to live along the border from April to early November. There is evidence they continue south through the winter, but details of their migratory patterns are not well known.

Three other species live in the cave in smaller numbers, including the ghost-faced bat, which has folds of skin below its chin and eyes that appear to be tucked inside its ears, and the naked-back bat, so named for its smooth, almost rubbery-looking skin.

But Boca became a high priority because of the Mexican free-tailed bat and its proclivity to eat the corn earworm, a vicious moth that devours corn crops as it migrates and lays eggs all the way from Winter Garden, Tex., to the Canadian border. As a pest control, bats are more attractive than chemicals because they cost little, pose almost no risk to human health and target specific bugs, leaving the rest of nature undisturbed, Correa said. And because of their location along the border, Mexican free-tailed bats are well-positioned to eliminate earworms before they strike vital crops.

"These bats are of enormous ecological and economic benefit on both sides of the border," Merlin Tuttle, founder and president of Bat Conservation International, said in an e-mail. BCI and Fondo Mexicano, a private organization focused on biodiversity projects, have commissioned assessments of an additional 150 hard-to-reach caves along the border. The bat population in those has fallen from about 55 million to 15 million, Moreno said.

Though modest in size, the 20-acre Boca property offers conservation opportunities beyond bats. It is home to a pair of endangered peregrine falcons, a threatened cypress species and a few endangered American beaver, according to Pronatura. From a single location, visitors can take in an entire ecosystem -- the insects feeding on the plants, the bats eating the bugs and the falcons feeding on the bats.

Since Pronatura began informing visitors about the fragile residents of Cueva de la Boca last year, the number of Mexican free-tailed bats has doubled to about 1.2 million, Correa said. It is quite a sight, she marveled, when the colony departs for another night of hunting and dining. When they emerge in one burst, their presence in the skies shows up on Doppler radar.

She can only imagine what 20 million or so would look like.

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October 15, 2006; NY Times
The Way We Live Now

The Vegetable-Industrial Complex

By MICHAEL POLLAN

Soon after the news broke last month that nearly 200 Americans in 26 states had been sickened by eating packaged spinach contaminated with E. coli, I received a rather coldblooded e-mail message from a friend in the food business. “I have instructed my broker to purchase a million shares of RadSafe,” he wrote, explaining that RadSafe is a leading manufacturer of food-irradiation technology. It turned out my friend was joking, but even so, his reasoning was impeccable. If bagged salad greens are vulnerable to bacterial contamination on such a scale, industry and government would very soon come looking for a technological fix; any day now, calls to irradiate the entire food supply will be on a great many official lips. That’s exactly what happened a few years ago when we learned that E. coli from cattle feces was winding up in American hamburgers. Rather than clean up the kill floor and the feedlot diet, some meat processors simply started nuking the meat — sterilizing the manure, in other words, rather than removing it from our food. Why? Because it’s easier to find a technological fix than to address the root cause of such a problem. This has always been the genius of industrial capitalism — to take its failings and turn them into exciting new business opportunities.

We can also expect to hear calls for more regulation and inspection of the produce industry. Already, watchdogs like the Center for Science in the Public Interest have proposed that the government impose the sort of regulatory regime it imposes on the meat industry — something along the lines of the Hazard Analysis and Critical Control Point system (Haccp, pronounced HASS-ip) developed in response to the E. coli contamination of beef. At the moment, vegetable growers and packers are virtually unregulated. “Farmers can do pretty much as they please,” Carol Tucker Foreman, director of the Food Policy Institute at the Consumer Federation of America, said recently, “as long as they don’t make anyone sick.”

This sounds like an alarming lapse in governmental oversight until you realize there has never before been much reason to worry about food safety on farms. But these days, the way we farm and the way we process our food, both of which have been industrialized and centralized over the last few decades, are endangering our health. The Centers for Disease Control and Prevention estimate that our food supply now sickens 76 million Americans every year, putting more than 300,000 of them in the hospital, and killing 5,000. The lethal strain of E. coli known as 0157:H7, responsible for this latest outbreak of food poisoning, was unknown before 1982; it is believed to have evolved in the gut of feedlot cattle. These are animals that stand around in their manure all day long, eating a diet of grain that happens to turn a cow’s rumen into an ideal habitat for E. coli 0157:H7. (The bug can’t survive long in cattle living on grass.) Industrial animal agriculture produces more than a billion tons of manure every year, manure that, besides being full of nasty microbes like E. coli 0157:H7 (not to mention high concentrations of the pharmaceuticals animals must receive so they can tolerate the feedlot lifestyle), often ends up in places it shouldn’t be, rather than in pastures, where it would not only be harmless but also actually do some good. To think of animal manure as pollution rather than fertility is a relatively new (and industrial) idea.

Wendell Berry once wrote that when we took animals off farms and put them onto feedlots, we had, in effect, taken an old solution — the one where crops feed animals and animals’ waste feeds crops — and neatly divided it into two new problems: a fertility problem on the farm, and a pollution problem on the feedlot. Rather than return to that elegant solution, however, industrial agriculture came up with a technological fix for the first problem — chemical fertilizers on the farm. As yet, there is no good fix for the second problem, unless you count irradiation and Haccp plans and overcooking your burgers and, now, staying away from spinach. All of these solutions treat E. coli 0157:H7 as an unavoidable fact of life rather than what it is: a fact of industrial agriculture.

But if industrial farming gave us this bug, it is industrial eating that has spread it far and wide. We don’t yet know exactly what happened in the case of the spinach washed and packed by Natural Selection Foods, whether it was contaminated in the field or in the processing plant or if perhaps the sealed bags made a trivial contamination worse. But we do know that a great deal of spinach from a great many fields gets mixed together in the water at that plant, giving microbes from a single field an opportunity to contaminate a vast amount of food. The plant in question washes 26 million servings of salad every week. In effect, we’re washing the whole nation’s salad in one big sink.

It’s conceivable the same problem could occur in your own kitchen sink or on a single farm. Food poisoning has always been with us, but not until we started processing all our food in such a small number of “kitchens” did the potential for nationwide outbreaks exist.

Surely this points to one of the great advantages of a decentralized food system: when things go wrong, as they sooner or later will, fewer people are affected and, just as important, the problem can be more easily traced to its source and contained. A long and complicated food chain, in which food from all over the countryside is gathered together in one place to be processed and then distributed all over the country to be eaten, can be impressively efficient, but by its very nature it is a food chain devilishly hard to follow and to fix.

Fortunately, this is not the only food chain we have. The week of the E. coli outbreak, washed spinach was on sale at my local farmers’ market, and at the Blue Heron Farms stand, where I usually buy my greens, the spinach appeared to be moving briskly. I tasted a leaf and wondered why I didn’t think twice about it. I guess it’s because I’ve just always trusted these guys; I buy from them every week. The spinach was probably cut and washed that morning or the night before — it hasn’t been sitting around in a bag on a truck for a week. And if there ever is any sort of problem, I know exactly who is responsible. Whatever the risk, and I’m sure there is some, it seems manageable.

These days, when people make the case for buying local food, they often talk about things like keeping farmers in our communities and eating fresh food in season, at the peak of its flavor. We like what’s going on at the farmers’ market — how country meets city, how children learn that a carrot is not a glossy orange bullet that comes in a bag but is actually a root; how we get to taste unfamiliar flavors and even, in some sense, reconnect through these foods and their growers to the natural world. Stack all this up against the convenience and price of supermarket food, though, and it can sound a little. . .sentimental.

But there’s nothing sentimental about local food — indeed, the reasons to support local food economies could not be any more hardheaded or pragmatic. Our highly centralized food economy is a dangerously precarious system, vulnerable to accidental — and deliberate — contamination. This is something the government understands better than most of us eaters. When Tommy Thompson retired from the Department of Health and Human Services in 2004, he said something chilling at his farewell news conference: “For the life of me, I cannot understand why the terrorists have not attacked our food supply, because it is so easy to do.” The reason it is so easy to do was laid out in a 2003 G.A.O. report to Congress on bioterrorism. “The high concentration of our livestock industry and the centralized nature of our food-processing industry” make them “vulnerable to terrorist attack.” Today 80 percent of America’s beef is slaughtered by four companies, 75 percent of the precut salads are processed by two and 30 percent of the milk by just one company. Keeping local food economies healthy — and at the moment they are thriving — is a matter not of sentiment but of critical importance to the national security and the public health, as well as to reducing our dependence on foreign sources of energy.

Yet perhaps the gravest threat now to local food economies — to the farmer selling me my spinach, to the rancher who sells me my grass-fed beef — is, of all things, the government’s own well-intentioned efforts to clean up the industrial food supply. Already, hundreds of regional meat-processing plants — the ones that local meat producers depend on — are closing because they can’t afford to comply with the regulatory requirements the U.S.D.A. rightly imposes on giant slaughterhouses that process 400 head of cattle an hour. The industry insists that all regulations be “scale neutral,” so if the U.S.D.A. demands that huge plants have, say, a bathroom, a shower and an office for the exclusive use of its inspectors, then a small processing plant that slaughters local farmers’ livestock will have to install these facilities, too. This is one of the principal reasons that meat at the farmers’ market is more expensive than meat at the supermarket: farmers are seldom allowed to process their own meat, and small processing plants have become very expensive to operate, when the U.S.D.A. is willing to let them operate at all. From the U.S.D.A.’s perspective, it is much more efficient to put their inspectors in a plant where they can inspect 400 cows an hour rather than in a local plant where they can inspect maybe one.

So what happens to the spinach grower at my farmers’ market when the F.D.A. starts demanding a Haccp plan — daily testing of the irrigation water, say, or some newfangled veggie-irradiation technology? When we start requiring that all farms be federally inspected? Heavy burdens of regulation always fall heaviest on the smallest operations and invariably wind up benefiting the biggest players in an industry, the ones who can spread the costs over a larger output of goods. A result is that regulating food safety tends to accelerate the sort of industrialization that made food safety a problem in the first place. We end up putting our faith in RadSafe rather than in Blue Heron Farms — in technologies rather than relationships.

It’s easy to imagine the F.D.A. announcing a new rule banning animals from farms that produce plant crops. In light of the threat from E. coli, such a rule would make a certain kind of sense. But it is an industrial, not an ecological, sense. For the practice of keeping animals on farms used to be, as Wendell Berry pointed out, a solution; only when cows moved onto feedlots did it become a problem. Local farmers and local food economies represent much the same sort of pre-problem solution — elegant, low-tech and redundant. But the logic of industry, apparently ineluctable, has other ideas, ideas that not only leave our centralized food system undisturbed but also imperil its most promising, and safer, alternatives.

Michael Pollan, a contributing writer for the magazine, is the author most recently of “The Omnivore’s Dilemma: A Natural History of Four Meals.”

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America's Population Set to Top 300 Million
Immigration Fuels Much of Growth

By Blaine Harden
Washington Post Staff Writer
Thursday, October 12, 2006; A01

Clicking upward at a rate of one person every 11 seconds, the U.S. population will officially surpass 300 million in the next week or so.

The milestone is a reminder that the United States remains a remarkable demographic specimen, 230 years old (since the Declaration of Independence) and still in a growth spurt.

Behind only China and India, it is the planet's third most populous nation. For a rich, highly developed country, it is anomalously fertile, with a population that is increasing briskly, in sharp contrast to anemic growth or decline in Western Europe and Japan. Some demographers say this continued growth is essential to support an aging population in retirement and a sign of the continued allure of the United States even at a time when its image around the world has been sullied by the war in Iraq.

Yet, how will the momentous 300-million marker be celebrated in Washington?

"Those plans, believe it or not, are still being finalized," said Robert B. Bernstein, a Census Bureau spokesman. "I don't yet know what, if anything, we are going to do in the way of an event."

When the U.S. population surpassed 200 million on a census clock in 1967, cheers rang through the lobby of the Commerce Department, and applause interrupted President Lyndon B. Johnson's celebratory speech.

Four decades later, however, 300 million seems to be greeted more with hand-wringing ambivalence than chest-thumping pride.

"When we hit 100 million, it was a celebration of America's might in the world," said Dowell Myers, a professor of urban planning and demography at the University of Southern California. "When we hit 200 million, we were solidifying our position. But at 300 million, we are beginning to be crushed under the weight of our own quality-of-life degradation."

One reason for anxiety may be that U.S. population growth is fueled in large measure by immigrants and their children, a circumstance that increasingly worries native-born Americans and makes politicians jumpy, especially four weeks before an election.

Immigrants, legal and illegal, account for about 40 percent of population growth. Immigration is also an important reason the "natural increase" in the population -- excess of births over deaths -- is significantly higher in the United States compared with Europe or Japan. Hispanics from Latin America, by far the largest share of recent immigrants, are driving the natural increase here. On average, Hispanic women have one more child than non-Hispanic white women.

Three hundred million is also a discomfiting reminder of a nation that, on its east and west coasts, at least, is running noticeably low on elbow room. More humanity is stirring up more traffic, more sprawl, more rules against growth, more protests against anti-growth rules, and more of the greenhouse gas emissions that cause global warming. A surging population in the arid Southwest is also straining the supply of water. The growth is adding to a country that represents 4 percent of the world's population but consumes 25 percent of the planet's oil.

"We are not the wide-open spaces anymore," said Martha Farnsworth Riche, who headed the Census Bureau in the mid-1990s and is now a research demographer at Cornell University. "Our choices are constrained."

In Los Angeles, the nation's most densely populated metropolitan region and its most heavily Latino area, 300 million will be yet another confirmation that congestion is out of control, Myers predicted.

"I don't think people view population growth as a plus anymore," he said, noting that Angelenos are punished by it "every single day" when they go out in freeway traffic.

The 300-million milestone, it should be noted, is an educated guess by the Census Bureau, not an actual people count. It emerges from a formula that crunches births and new immigrants against deaths. The 300-millionth person, therefore, will never win a trip to Disneyland because he or she will not be identified.

The 100-million markers are also coming more quickly. From the Declaration of Independence in 1776, it took the country 139 years to get to 100 million in 1915, then 52 more years to reach 200 million in 1967 and 39 more years to hit 300 million. The 400 million mark, according to census projections, will be reached in about 37 years. That, of course, could change if the current anxiety about immigration were to result in the closing of the country's borders. Without immigration, the U.S. population could go into a European-style stall.

It was a change in immigration law in 1965, when Congress abolished a national-origins quota system, that unintentionally reignited immigrant-led population growth, according to William H. Frey, a demographer with the Brookings Institution. "It made family reunification an important criteria for immigration and it led to a chain reaction of higher fertility," he said.

The relative presence of immigrants, about 12 percent of the total population, is more than double what it was when the population topped 200 million. Immigrants are also more visible than ever, having fanned out from gateway cities such as New York and Los Angeles to parts of the rural South and Midwest where they had not been seen in substantial numbers before. Still, the foreign-born share of the population remains lower than between the melting-pot years of 1860 and 1920, when it was about 14 percent.

Many demographers believe it is shortsighted to be anxious about the 300-million marker. They regard it as a symbol of an economically dynamic democracy that remains popular in much of the world.

"As almost nothing else can, immigration-led growth signals the attractiveness of the American economy and polity," said Kenneth Prewitt, a former head of the Census Bureau and now professor of public affairs at Columbia University. "You don't see large numbers of immigrants clamoring to move to China."

Indeed, lots of good news is embodied in the lives of the 300 million. Longevity has jumped from 55 years in 1915, to 71 years in 1967, to 78 years now. Over that time frame, the percentage of the adult population with a high-school diploma has jumped from 14 percent to 85 percent. Homeownership has risen from 46 to 69 percent. The death rate from tuberculosis has fallen from 140 to 0.2 per 100,000 people. While houses are 4.5 times as expensive (in constant dollars) as they were in 1915 and twice as expensive as in 1967, a gallon of milk in 2006 costs less than half what it went for in 1915 and in 1967.

After this year's election rhetoric cools, Frey hopes that Americans will see a silver lining in immigration: Foreign-born residents and their children will surge into the workforce, and their payroll taxes will help reduce funding shortfalls for Social Security and other social programs that benefit older people.

"So many middle-aged baby boomers who oppose immigration may be biting the hand that could feed them," Frey said.

This assumes, though, that immigrant children, especially Hispanics and blacks, will be educated well enough in American schools to find competitive jobs in the global economy.

Poverty rates for children have exceeded poverty rates for the elderly for more than 40 years, according to Linda A. Jacobsen, director of domestic programs at the Population Reference Bureau, a nonpartisan research group.

Hispanic and black children are between three and four times as likely to live in poverty as whites, so their growing numbers may not translate into growing national wealth. In addition, the divide between aging baby boomers in retirement and the younger workers who are supporting them with payroll taxes will have a racial, as well as a generational, dimension.

"Unless we can reduce age, racial and ethnic disparities in poverty," Jacobsen warns, "children from minority groups may be less able and less willing, as they grow up, to support the predominantly white elderly population."


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Study: Decaf Coffee Has Some Caffeine

The Associated Press
Washington Post, October 11, 2000

GAINESVILLE, Fla. -- Does that cup of decaffeinated coffee give you a jolt? It may, because almost all decaf coffee contains some caffeine, a new University of Florida study shows.

The results could have implications for people told to avoid caffeine because of certain medical conditions such as high blood pressure, kidney disease or anxiety disorders, according to the study reported in this month's Journal of Analytical Toxicology.

"If someone drinks five to 10 cups of decaffeinated coffee a day, the dose of caffeine could easily reach the level in a cup or two of caffeinated coffee," said co-author Dr. Bruce Goldberger, a professor and director of the university's William R. Maples Center for Forensic Medicine.

Researchers purchased 10 cups of 16-ounce drip-brewed coffee from nine national chains and local coffee houses and tested them for caffeine content.

Instant decaffeinated Folgers Coffee Crystals didn't have any caffeine, but the others contained caffeine ranging from 8.6 milligrams to 13.9 milligrams. Typically, 16 ounces of drip-brewed coffee contain about 170 milligrams of caffeine.

Researchers also analyzed 12 samples of Starbucks decaffeinated espresso and brewed decaffeinated coffee. The espresso drinks had from 3 milligrams to 15.8 milligrams each, while the brewed coffee had from 12 to 13.4 milligrams per 16-ounce drink.

Even moderate caffeine levels can increase heart rate, blood pressure, agitation and anxiety in some people, Goldberger said.

Dr. Roland Griffiths, a professor of behavioral biology and neuroscience at Johns Hopkins School of Medicine, said caffeine as low as 10 milligrams can cause behavioral effects in sensitive individuals. Some popular espresso drinks, such as lattes, can deliver as much caffeine as a can of Coca-Cola, about 31 milligrams.

"The important point is that decaffeinated coffee is not the same as caffeine-free," Griffiths said.

==========
Lettuce recalled over E. coli concerns


[UPDATE: AS OF YESTERDAY, 10/11, LETTUCE WAS CLEARED BY FDA OF CONTAMINATION]

Associated Press
USATODAY.com; 10/9/2006

SAN FRANCISCO — Less than a week after the Food and Drug Administration lifted its warning on fresh spinach grown in California's Salinas Valley, a popular brand of lettuce grown there was recalled Sunday over concerns about E. coli contamination.

The lettuce does not appear to have caused any illnesses, the president of Salinas-based Nunes Co. said.

The lettuce scare comes amid other federal warnings that some brands of spinach, bottled carrot juice and recent shipments of beef could cause grave health risks — including paralysis, respiratory failure and death.

Executives ordered the recall after learning that irrigation water may have been contaminated with E. coli, said Tom Nunes Jr., president of the company.

So far, company investigators have not found E. coli bacteria in the lettuce itself, Nunes stressed.

"We're just reacting to a water test only. We know there's generic E. coli on it, but we're not sure what that means," he said. "We're being extra careful. This is precautionary."

The recall covers green leaf lettuce under the Foxy brand that was purchased in grocery stores Oct. 3-6 in Arizona, California, Nevada, Washington, Oregon, Idaho and Montana. It was also sold to distributors in those states who may have sold it to restaurants or institutions.

The recalled lettuce was packaged as "Green Leaf 24 Count, waxed carton," and "Green Leaf 18 Count, cellophane sleeve, returnable carton." Packaging is stamped with lot code 6SL0024.

FDA spokeswoman Julie Zawisza said the agency is aware of the voluntary recall but had no details.

"As a standard course of action, we would expect the firm to identify the source of the contamination and take steps to ... ensure that it doesn't happen again," Zawisza wrote in an e-mail.

It's unlikely that the bacteria in the lettuce fields share the source of the E. coli found in spinach that has sickened nearly 200 people and has been linked to three deaths nationwide, Nunes said.

Pathogenic Escherichia coli bacteria, or E. coli, can proliferate in uncooked produce, raw milk, unpasteurized juice, contaminated water and meat. When consumed, it may cause diarrhea and bloody stools.

Although most healthy adults recover within a week without long-term side effects, some people may develop a form of kidney failure.

That illness is most likely to occur in young children, senior citizens and people with compromised immune systems. In extreme cases, it can lead to kidney damage or death.

The recall at Nunes Co., a family-owned business with more than 20,000 acres of cropland in Arizona and California, comes days after federal agents searched two Salinas Valley produce companies connected to the nationwide spinach scare.

Epidemiologists also warned consumers last week to stay away from some bottled carrot juice after a Florida woman was paralyzed and three people in Georgia experienced respiratory failure, apparently due to botulism poisoning.

Also on Friday, an Iowa company announced that it was recalling 5,200 pounds of ground beef suspected of having E. coli. The government said no illnesses have been reported from consumption of the beef.

The outbreaks have sparked demands to create a new federal agency in charge of food safety. Sens. Charles Schumer and Hillary Rodham Clinton, both New York Democrats, are sponsoring legislation authored by Sen. Richard Durbin, D-Ill., to create the unified Food Safety Agency.

"This recent outbreak must be a wake-up call to get our food safety house in order, because right now it's in pure disarray," Schumer said at his Manhattan office. "We need to have one agency take charge to ensure the next outbreak isn't far worse."

The outbreaks have also devastated the economy of Salinas Valley, the self-proclaimed "Salad Bowl to the World."

Farmers in the area, about 100 miles south of San Francisco, began plowing spinach crops under and laying off workers last month, as government inspectors examined fields and packing houses for the source of the deadly outbreak.

Nunes said he upgraded safety inspection protocols in wake of the spinach scare.

"There's a high level of urgency in our industry, and we're being very proactive," Nunes said. "It's obviously based upon recent events in the produce industry and concern for customers. We just don't want anything to happen."

==========
October 8, 2006; NY Times
The Age of Dissonance

Mean Vegetables

By BOB MORRIS

Good news. Spinach is safe to eat again, according to the Food and Drug Administration. So dig in if you dare. But beware of carrot juice. Last week, just two days before spinach got the clear, a brand of carrot juice from California was linked to botulism from a bacterium in soil that increases when juice isn’t properly refrigerated.

Maybe you should have some chocolate and red wine instead. Studies in recent years show that they’re linked with phenols that will lower your cholesterol levels.

No need to worry about their extra calories, either. Research from the Centers for Disease Control and Prevention published last spring suggests that overweight people live longer.

And now that a couple stiff drinks a day are deemed good for men’s hearts and Viagra is under study for the same thing, a longer life may be more appealing.

This is becoming the decade when bad is the new good and vice versa.

Go to jail like Lil’ Kim and it ends up being a good career move, right?

But yoga? It can cause as many injuries as jogging. And yoga mats can be as full of bacteria as airline blankets. Maybe it’s better to gossip. Studies are showing that gabbing at the water cooler is a “sophisticated, multifunctional interaction” that clarifies social rules and alleviates depression. Gambling? Seniors who indulge, a Yale study finds, are healthier than those who don’t because they’re engaging in social activity.

Even getting angry has been getting some good press lately, at least in Finland. One self-styled therapist there is offering “anger venting” classes to offset repressed emotions in a country that suffers from a high level of depression and suicide.

On television, meanwhile, Showtime has two series that are adding to the good-bad confusion. One show, “Weeds,” is about a lovable pot-dealing mother. The other, “Dexter,” is about a lovable serial killer. He only kills bad people, of course.

Nothing is black and white anymore. And the solid ground about what’s good for you has become as wobbly as mercury, which we now know makes healthy tuna and swordfish as much a risk as farmed salmon — frequently contaminated, but rich in omega oils.

You may as well have a steak. Maybe Woody Allen had it right in “Sleeper.” After being frozen for 200 years, he wakes up to find that steak, among other things, has become a health food. Sounds a lot like what Atkins dieters have already discovered.

What else? Bicycling (exercise!) is good unless you’re a man worried about the increased incidence of prostate cancer and impotence among cyclists. Surfing, so meditative and aerobic, can be bad if you surf in California after heavy rains, when the ocean is polluted with fecal bacteria that cause eye infections, liver damage and diarrhea.

What about being a congressional page? That used to be good. What is it now?

Perhaps all this is why the title of Steven Johnson’s “Everything Bad Is Good For You” struck a note when it was published last spring. Around the same time that the Journal of American Medicine reported that the overweight (but not obese) actually outlive the thin, Mr. Johnson was convincingly hypothesizing that video games and TV — both increasingly complex and conceptual in their scope — help rather than hinder mental development in children. He suggests that what parents always thought of as “cognitive junk food” may be more like the equivalent of green vegetables.

But that was before spinach became a menace. It’s enough to drive any well-meaning educator or mother mad.

Especially after they had to hear, not long before the spinach scare, that even seemingly salubrious fruit juice is contributing to the national obesity epidemic.

“We have healthy snacks at our school,” said Joy Franjola, who teaches the fourth grade at Public School 87 in Manhattan. “But today I gave out apples and wondered if they’re safe. Who’s to say what’s good anymore? At least we know French fries aren’t made with trans fats.”

Joanna Molloy, who writes the Rush & Molloy column in The Daily News and who has an 8-year-old son, said: “When chicken fingers are safer than spinach, you know the kids have won.” Her son defends chocolate by saying it’s an antioxidant.

“The irony is inescapable,” added Kim Chirles, an Upper West Side mother who used to make her own baby food. “So I’ve decided to feed my children at McDonald’s.”

Follow it up with some TV and chocolate and call it a healthy night.

==========
October 4, 2006; NY Times

Studies of Transcription of DNA Bring Nobel Prize
By THE ASSOCIATED PRESS

STOCKHOLM, Sweden -- American Roger D. Kornberg, whose father won a Nobel Prize a half-century ago, was awarded the prize in chemistry Wednesday for his studies of how cells take information from genes to produce proteins.

The work is important for medicine, because disturbances in that process are involved in illnesses like cancer, heart disease and various kinds of inflammation. And learning more about the process is key to using stem cells to treat disease.

Kornberg, 59, a professor at the Stanford University School of Medicine, said medical benefits from his research have taken root.

''There are ... already many therapies, many drugs that are in development in trials or already available and there will be many more,'' he said. ''Significant benefits to human health are already forthcoming. I think there will be many many more.''

Kornberg's award, following the Nobels for medicine and physics earlier this week, completes the first American sweep of the Nobel science prizes since 1983.

Americans have won or shared in all the chemistry Nobels since 1992. The last time the chemistry Nobel was given to just one person was in 1999.

Kornberg's father, Arthur, shared the 1959 Nobel medicine prize with Severo Ochoa for studies of how genetic information is transferred from one DNA molecule to another.

The younger Kornberg said he remembered traveling to Stockholm with his father for the Nobel Prize award ceremonies.

''I have always been an admirer of his work and that of many others preceding me. I view them as truly giants of the last 50 years. It's hard to count myself among them,'' he said.

''Something so remarkable as this can never be expected even though I was aware of the possibility. I couldn't conceivably have imagined that it would become reality.''

The Kornbergs are the sixth father and son to both win Nobel Prizes. One father and daughter -- Pierre Curie and Irene Joliot-Curie -- won Nobel Prizes in physics and chemistry, respectively. Marie Curie -- Irene's mother and Pierre's wife -- won two Nobel prizes, for chemistry and physics.

Roger Kornberg's prize-winning work produced a detailed picture of what scientists call transcription in eukaryotes, the group of organisms that includes humans and other mammals, the Royal Swedish Academy of Sciences said in its citation.

Kornberg shed light on how information is taken from genes and converted to molecules called messenger RNA. These molecules shuttle the information to the cells' protein-making machinery. Proteins, in turn, serve as building blocks and workhorses of cells, vital to structure and functions.

Since 2000, Kornberg has produced actual pictures of messenger RNA molecules being created, a process that resembles building a chain link by link. The images are so detailed that individual atoms can be distinguished.

''In an ingenious manner Kornberg has managed to freeze the construction process of RNA half-way through,'' the Nobel committee said. That let him capture the process of transcription in full flow, which is ''truly revolutionary,'' the committee said.

''Kornberg realized ... that to get to the chemical details of the (process) was fundamental,'' said Anders Liljas, a member of the Nobel Committee in Chemistry. ''Because if you don't really see it on a molecular, atomic level, then you don't really understand it.''

Kornberg's breakthrough was published in 2001, remarkably recent for honoring by Nobel prize standards. But it followed a decade of researching yeast cells -- whose similarity to human cells Kornberg called ''perfectly astounding'' -- in search of a method to reveal the transcription process.

In those 10 years, Kornberg was allowed to continue his research without publishing a single major finding -- a rare luxury in the world of science where funders often want instant results, said Hakan Wennerstrom, chairman of the Nobel Committee for Chemistry.

''I guess it helps to have a father who is a Nobel laureate,'' Wennerstrom said. ''But he also had previous publications of the highest level.''

Jeremy M. Berg, director of the National Institute of General Medical Sciences in Bethesda, Md., which has supported Kornberg's work for more than 20 years, called Kornberg's prize ''fantastically well-deserved.''

The question of how information from genes is turned into RNA is fundamental, Berg said, and Kornberg ''started working on it when it seemed somewhere between ambitious and crazy'' to figure out the detailed structure and functioning of the cell's machinery for doing the job, he said.

''The last five years have been really breathtaking in terms of the details of the structures that he's been producing and what they're revealing about the mechanism, as well as laying the groundwork for future studies of how gene regulation works,'' Berg said.

Kornberg is the the fifth American to win a Nobel prize this year. So far, all the prizes -- medicine, physics and chemistry -- have gone to Americans.

Last year's Nobel laureates in chemistry were France's Yves Chauvin and Americans Robert H. Grubbs and Richard R. Schrock, who were honored for discoveries that let industry develop drugs and plastics more efficiently and with less hazardous waste.

Alfred Nobel, the wealthy Swedish industrialist and inventor of dynamite who endowed the prizes, left only vague guidelines for the selection committee.

In his will, he said the prize should be given to those who ''shall have conferred the greatest benefit on mankind'' and ''have made the most important chemical discovery or improvement.''

This year's Nobel announcements began Monday, with the Nobel Prize in medicine going to Americans Andrew Z. Fire and Craig C. Mello for discovering a powerful way to turn off the effect of specific genes, opening a potential new avenue for fighting diseases as diverse as cancer and AIDS. Their work dealt with how messenger RNA can be prevented from delivering its message to the protein-making machinery.

On Tuesday, Americans John C. Mather and George F. Smoot won the physics prize for work that helped cement the big-bang theory of how the universe was created and deepen understanding of the origin of galaxies and stars.

Each prize includes a check for $1.4 million, a diploma and a medal, which will be awarded by Sweden's King Carl XVI Gustaf at a ceremony in Stockholm on Dec. 10.

Associated Press Writer Karl Ritter in Stockholm and AP science writer Malcolm Ritter in New York contributed to this report.

Nobel Prizes: http://www.nobelprize.org

==========
October 3, 2006; NY Times

Americans Win Nobel Prize in Physics

By THE ASSOCIATED PRESS

STOCKHOLM, Sweden -- Americans John C. Mather and George F. Smoot won the 2006 Nobel Prize in physics on Tuesday for work that helped cement the big-bang theory of the universe and deepen understanding of the origin of galaxies and stars.

Mather, 60, works at the NASA Goddard Space Flight Center in Greenbelt, Md., and Smoot, 61, works at the Lawrence Berkeley National Laboratory in Berkeley, Calif.

The scientists discovered the nature of ''blackbody radiation,'' cosmic background radiation believed to stem from the ''big bang,'' when the universe was born.

''They have not proven the big-bang theory but they give it very strong support,'' said Per Carlson, chairman of the Nobel committee for physics.

''It is one of the greatest discoveries of the century. I would call it the greatest. It increases our knowledge of our place in the universe.''

Their work was based on measurements done with the help of NASA's COBE satellite launched in 1989. They were able to observe the universe in its early stages about 380,000 years after it was born. Ripples in the light they detected also helped demonstrate how galaxies came together over time.

''The COBE results provided increased support for the big-bang scenario for the origin of the Universe, as this is the only scenario that predicts the kind of cosmic microwave background radiation measured by COBE,'' the Royal Swedish Academy of Sciences in Stockholm said in its citation.

The big-bang theory states that the universe was born billions of years ago from a rapidly expanding dense and incredibly hot state.

Reached at his home in Berkeley, Smoot told The Associated Press he was surprised when he got the call from the Nobel committee in the middle of the night.

''I was surprised that they even knew my number. After the discovery I got so many calls I unlisted it,'' he said.

''The discovery was sort of fabulous. It was an incredible milestone. Now this is a great honor and recognition. It's amazing,'' he said.

Mather said he was ''thrilled and amazed'' at receiving the prize.

''I can't say I was completely surprised, because people have said we should be awarded, but this is just such a rare and special honor,'' Mather said in a telephone interview with the Nobel committee.

He said he and Smoot did not realize how important their work was at the time of their discovery.

The COBE project gave strong support for the big-bang theory because it is the only scenario that predicts the kind of cosmic microwave radiation measured by the satellite.

The academy called Mather the driving force behind the COBE project while Smoot was responsible for measuring small variations in the temperature of the radiation.

With their findings, the scientists transformed the study of the early universe from a largely theoretical pursuit into a new era of direct observation and measurement.

''The very detailed observations that the laureates have carried out from the COBE satellite have played a major role in the development of modern cosmology into a precise science,'' the academy said.

Phillip F. Schewe, a spokesman for the American Institute of Physics, said he had expected the two to win the honor.

''It's just a really really difficult experimental measurement to make. ''It's the farthest out we can see in the universe and it's the farthest back in time,'' he said in a telephone interview.

Since 1986, Americans have either won or shared the physics prize with people from other countries 15 times.

Last year, Americans John L. Hall and Roy J. Glauber and German Theodor W. Haensch won the prize for work that could improve long-distance communication and navigation.

This year's award announcements began Monday with the Nobel Prize in medicine going to Americans Andrew Z. Fire and Craig C. Mello for discovering a powerful way to turn off the effect of specific genes, offering new hope for fighting diseases as diverse as cancer and AIDS.

The winner of the Nobel Prize in chemistry will be named Wednesday. The Bank of Sweden Prize in Economic Sciences in Memory of Alfred Nobel will be announced Oct. 9.

The winner of the peace prize -- the only one not awarded in Sweden -- will be announced Oct. 13 in Oslo, Norway.

A date for the literature prize has not yet been set.

Alfred Nobel, the wealthy Swedish industrialist and inventor of dynamite who endowed the prizes, left only vague guidelines for the selection committee.

In his will, he said the prize should be given to those who ''shall have conferred the greatest benefit on mankind'' and ''shall have made the most important discovery or invention within the field of physics.''

The prizes, which include a $1.4 million check, a gold medal and a diploma, are presented on Dec. 10, the anniversary of Nobel's death in 1896.

==========
[A note from your editor is in order here. The complexity of the eye has always been put forward by evolution deniers as an example of how evolution couldn't possibly create biological structure. Ipso ergo, something as complicated as the eye couldn't possibly have evolved. Biologists on the other hand, including Darwin himself (ch. VI of Origin of Species) have proposed that evolution of the eye makes perfect sense in light of the variety of light sensing organs in all sorts of organisms, from protozoa to insects to humans. The latest research from Howard Hughes Medical Institute shows how single mutations can produce major changes in eye development and structure. The results are in line with about 30 years of molecular genetics research showing similar genetic controls of other structures. I would hope that research like this puts an end to such silly arguments against evolution, but I'm not optimistic.]
 
HHMI News; October 1, 2006
A Fly’s-Eye View of Evolution

www.hhmi.org//news/zuker20061001.html

[“It’s not unusual to see alterations in regulatory proteins with a profound effect on form and function. This new finding, however, is unique because it illustrates how a change in a single structural protein can lead to such a spectacular change in form and function.” Charles S. Zuker]

Howard Hughes Medical Institute researchers have found that mutations in a single structural protein can determine whether an insect develops the highly organized, light-harvesting eye that flies have, or the optically simpler compound eye of a beetle or bee.

In their experiments, the scientists showed that flies without this structural protein develop a more primitive eye. This outcome was reversed in the laboratory when researchers supplied the missing protein to a more primitive eye system, inducing it to “evolve” into the more advanced eye.

These findings “help illustrate the beauty and power of evolution — how small changes can have such an incredible impact,” said HHMI investigator Charles S. Zuker, who led the study. Zuker and his colleagues at the University of California, San Diego reported their findings October 1, 2006, in an advance online publication in the journal Nature. The lead author of the paper was Andrew Zelhof. Robert Hardy and Ann Becker were co-authors.

Working with the fruitfly Drosophila, the researchers explored the formation of transparent rod-like structures in the compound eye called rhabdomeres. Rhabdomeres feed light to the bundles of photoreceptors that comprise each of the 800 unit eyes in the fly's compound eyes. Rhabdomeres are fused into a single light-gathering structure in the more primitive “closed rhabdom” compound eyes of beetles, bees, and some mosquitoes. Flies, on the other hand, have evolved a more advanced “open rhabdom” structure. In the more sophisticated eyes of flies, the rhabdomeres are separated, and as a result, fly eyes have significantly better angular resolution, and can detect smaller moving objects.

Zuker, Zelhof, and their colleagues planned their experiments to identify the genes and biological pathway required to assemble the light-harvesting system of photoreceptor neurons. To define those genes, they used a chemical to induce mutations in fruitflies and examined the mutant flies under a microscope in search of any with malformed eyes.

“Much to our delight, we discovered two mutant lines that looked as if their eyes had been transformed from an open-rhabdom to a closed system,” said Zuker. “In fact, in looking at the eyes of one of those, you could easily mistake them for the eyes of an insect with a closed-rhabdom system,” he said.

The researchers' genetic analysis of these flies resulted in the identification of three genes, spacemaker, prominin and chaoptin, which together orchestrate the assembly of rhabdomeres into the fly's elegant photoreceptor system.

Zelhof, the lead author of the study, then compared the expression of spacemaker, prominin, and chaoptin genes in the housefly and a mosquito, whose eyes have the open structure —with that of the honeybee and flour beetle - insects with closed-rhabdom eyes. Although spacemaker was expressed in the body of all the species of insect that were studied, the scientists found that the gene was not turned on in the eyes of species with closed rhabdom systems. “These findings led us to hypothesize that Spacemaker protein may be a key determinant of the evolutionary transition from closed to open-rhabdom systems,” said Zelhof. “Validating that proposal required one critical acid test; and that was to introduce the protein into a closed system and see whether we could transform it into an open one,” he said.

Fortunately, in addition to its open rhabdom eye, the fruitfly itself also possesses a primitive closed version of an eye. This is found in the light sensors called ocelli, which are located on the top of the head, and used for navigation. When the researchers engineered fruitflies that expressed the Spacemaker protein in their ocelli, they found that the ocelli completely reorganized into an open rhabdom system.

Zuker said the findings offer an important lesson about the beauty of evolution. “It's not unusual to see alterations in regulatory proteins with a profound effect on form and function,” he said. “For example, altering a single transcription factor that controls a hierarchy of downstream products can cause an insect to grow extra legs or lose wings. This new finding, however, is unique because it illustrates how a change in a single structural protein can lead to such a spectacular change in form and function.”

==========

Colleges eat fresh by purchasing from local farmers

Associated Press
CNN.com; 10/1/06

HYDE PARK, New York -- An earthy abundance from local farms comes through the loading docks of the Culinary Institute of America: sprigs of asparagus in the spring, peas and beets in the summer, apples and squash in the fall.

The food -- much of it taken from the soil the day before -- provides fresh fodder from the Hudson Valley for the riverside school's five restaurants and classroom kitchens.

Just as importantly, it drums up business for the farmers.

The culinary institute, which buys directly from about two dozen local farms, is among the many colleges providing healthier choices for their students while throwing a lifeline to farmers getting by on thin margins.

"We can't single-handedly save Hudson Valley agriculture," said Paul Wigsten, buyer for the culinary institute. "But we'd like to give it a shot."

The Web site farmtocollege.org lists more than 100 college buying programs, with such participants as Harvard University, Ohio University and the University of California, Santa Barbara.

In New York, local buying programs are in place at Vassar College, Hamilton College, Skidmore College and Rensselaer Polytechnic Institute, according to the Commission on Independent Colleges and Universities.

The state university system reports more than a half-dozen of its 64 campuses serve local farm fare. The programs vary. Potsdam buys dozens of items from onions to buffalo meat through a local cooperative; New Paltz started a pilot program this semester buying local zucchini.

Sen. Hillary Rodham Clinton calls the college links a crucial part of the strategy of creating new markets for New York farmers -- on par with her efforts to get New York apples in the hands of JetBlue Airways passengers or Finger Lakes Rieslings served in Manhattan restaurants. She said the overall goal is to bridge the "disconnect" between local producers and local consumers.

The culinary institute -- with its test kitchens and public restaurants -- has a bigger appetite than most colleges. School officials estimate they spend $370,000 annually on everything from local milk to melons to mushrooms. In season, they can buy 40 percent of their produce locally (though it dips precipitously in the winter).

For Wigsten, it means juggling delivery dates among two dozen farmers. But he said it's worth it for food with more snap and taste, as well as a longer shelf life.

"Look at this stuff," Wigsten said, examining fresh leaves of red oak leaf lettuce. "It's gorgeous."

A potential downside for colleges is the cost. Local foodstuffs often cost more because they are produced on a much smaller scale than industrialized operations in the West.

Perhaps the biggest problem, at least in northern climates, is that growing seasons tend to peter out by October. Wigsten gets around the problem somewhat by buying hydroponic tomatoes and greenhouse-grown salad greens during the cold months.

Potsdam food service director George Arnold said he enjoys the robust local tomatoes while he can because the tomatoes shipped into the area in the winter are far inferior.

"I know in February it will be back to a piece of pink plastic," he said.

==========
At E. Coli Hunt's End, A Safety Standards Gap

By Annys Shin
Washington Post, September 22, 2006

It took exactly 14 days from the time state health officials in Wisconsin noticed five cases of E. coli O157:H7 in the same county until investigators arrived Wednesday at a field in California's Salinas Valley in search of the bacteria that ended up in bagged spinach and sickened 157 people in 23 states.

The outbreak -- the largest, in terms of victims, caused by fresh produce -- has exposed strengths and weaknesses in the highly fragmented U.S. food safety system. And the extent of it has federal officials talking about imposing tougher regulation.

"There are good agricultural practices out there. . . . The question that will be addressed is: Are they adequate? Are they being followed? Does the industry need to be further regulated to be safe?" said David W. Acheson, a top Food and Drug Administration food safety official.

Even as public health officials have gotten better at identifying the onset of illness borne by raw fruits and vegetables, the rules and procedures to prevent those outbreaks remain weaker than those for meat and poultry, consumer advocates and food safety experts said. And their enforcement relies on the voluntary efforts of growers and processors, and on the FDA, which has responsibility for much of the food supply but nowhere near the authority or resources devoted to the monitoring of meat and poultry.

"The FDA is acting like the fire department after the fire has already started," said Caroline Smith DeWaal, director of food safety for the Center for Science in the Public Interest.

Public health officials have sought to contain E. coli O157:H7, which over the past 20 years has turned up in hamburgers, alfalfa sprouts, apple juice, cheese and lettuce. Escherichia Coli is normally found in the digestive tracts of humans and warm-blooded animals, but the rare and particularly toxic strain, E. coli O157:H7, damages the intestinal lining, leading to internal bleeding and organ failure. It can be fatal, especially for the very young and old. The latest outbreak killed a 77-year-old woman in Wisconsin.

Wisconsin public health officials were the first to sound the alarm on the current outbreak and call in the federal government, after receiving a report on Sept. 5 of five E. coli cases in Manitowoc County, located between Green Bay and Milwaukee. It later turned out that only one of those cases was linked to the tainted spinach; the others were traced to a local fair. But the initial cluster helped put state epidemiologists on high alert two days later when they learned of five more cases in the southeastern part of the state.

In those five, all of the victims had come down with Hemolytic Uremic Syndrome, a condition caused by E. coli that leads to kidney failure. On Sept. 8, Wisconsin officials notified the Centers for Disease Control and Prevention in Altanta and shared the DNA fingerprint of the E. coli strain with PulseNet, an 11-year-old network of public health labs operated by the CDC that has become instrumental in uncovering outbreaks of food-borne illness.

By Sept. 13, detailed interviews with seven of the victims led Wisconsin officials to believe there was a link with spinach, Department of Health and Family Services spokesman Jason Helgerson said. Through the CDC, they learned Oregon officials had reached the same conclusion. With spinach suspected as the culprit, the CDC called in the FDA.

On Sept. 14, the CDC held a conference call with several states reporting cases of E. Coli O157:H7. That evening, the FDA issued its initial warning to consumers not to eat bagged fresh spinach.

The next day, last Friday, the FDA, based on information gathered from victims, narrowed down the search to Natural Selection Foods, which processes spinach used by 30 different brands, and broadened its warning to include all fresh spinach, loose and bagged.

Using supplier and distribution records at Natural Selection, the FDA confirmed California as the source of the contamination on Tuesday. The next day, about a dozen FDA and California state investigators descended on a farm in the Salinas Valley, the first of nine farms they had singled out through records.

On Wednesday, New Mexico officials said they found the strain of E. coli involved in the outbreak in an opened bag of spinach from which a victim had eaten; that helped investigators with further details such as what fields the tainted crop may have come from. Yesterday, FDA officials sent six more investigators into the fields, bringing the total to 19.

Over the past decade, outbreaks of E. coli caused by fresh produce have become more frequent, while the number caused by meat and poultry has declined. Consumer advocates and some food safety experts believe the disparity reflects differences in the regulation of fresh produce and of meat and poultry.

The bifurcated system, which puts the U.S. Department of Agriculture in charge of meat and poultry and gives the FDA oversight of the rest of the food supply, has changed little since its creation a century ago following publication of "The Jungle," Upton Sinclair's expose of Chicago slaughterhouses.

Last year, the FDA's approximately 800 inspectors conducted about 20,000 food safety inspections of all non-meat products, allowing them to visit a processing plant on average once every few years. By contrast, the USDA, which has an inspector daily in more than 6,000 processing plants nationwide, performs the same number of inspections in a matter of days, said Tony Corbo, a lobbyist with Food and Water Watch.

"I liken this to Jack in the Box all over again," said Michael Doyle, director of the University of Georgia's Center for Food Safety. He was referring to a 1993 outbreak of E. coli in Jack in the Box hamburgers that sickened hundreds and killed three.

After that episode, the USDA mandated tougher processing standards, which food safety experts credit with lowering the frequency of meat- and poultry-related E. coli and salmonella outbreaks.

"Until the government comes in and says we're going to have a law here . . . I don't think we're going to make any monumental change in improving the safety of bagged salads in general," Doyle said.

Food safety in the fresh produce industry is largely a matter of self-regulation. Typically, the FDA and state health department officials can inspect only processing plants and don't venture onto farms unless there's an outbreak. The FDA doesn't have the power to order recalls, though it can seize food before it has gone to retailers if a producer doesn't agree to one. The federal government has more powers when it comes to produce that has a plant disease that threatens other crops, DeWaal said.

Growers and processors say they have an added layer of scrutiny from third-party auditors they hire "to avoid the situation we're seeing now," said Bob Perkins, executive director of the Monterey County Farm Bureau.

The FDA was more assertive after the 19th episode of E. coli-tainted greens last October, sending a warning letter to the industry, which in the following months worked out a set of voluntary best practices for farmers and processors.

Yesterday, industry leaders were talking again about more voluntary guidelines.

Earlier this month, the FDA and California state officials, with the cooperation of the industry, began visiting fields and processing plants to get a better grasp of possible sources of contamination.

Industry leaders and some food safety experts contend there is no point to further regulation until scientists can figure out how produce becomes contaminated with E. coli.

"If you don't know what the problem is how is that inspector going to help you?" said Jerry Welcome, spokesman for the United Fresh Fruit & Vegetable Association. "Is the answer throwing inspectors in and putting more regulations in, or do we need to spend more time and effort to figure out how does it happen?"

---------------
Spinach safe to eat, but FDA has bigger worries
All E. coli-tainted greens have been recalled; focus remains on Calif. farms

Reuters
MSNBC.com; Sept 29, 2006

WASHINGTON - Fresh spinach is safe to eat in the United States because all E. coli-tainted spinach has been recalled, the U.S. Food and Drug Administration said on Friday.

But the FDA said serious concerns remained because so many outbreaks of food poisoning in fresh greens such as spinach and lettuce have been traced to California farms. The current outbreak, which dates back to mid-August and hit 26 states, may have killed as many as three people and put 97 in the hospital.

California’s food industry needs to address the issue and tougher regulations may be needed, said the FDA’s Dr. David Acheson. But consumers can safely eat fresh spinach again, he told reporters in a telephone briefing.

“The spinach that is going to come on to the market next week or whenever is going to be as safe as it was before this outbreak,” Acheson said. “But ... there are some longer term issues that need to be addressed.”

The outbreak had been traced to fresh spinach processed by San Juan Bautista, California-based Natural Selection Foods LLC. The company said on Thursday that the FDA had found no contamination by toxic bacteria at two plants and that they were bacteria-free.

Acheson denied this.

“I don’t know who gave them this information but it is incorrect,” he said. “The information I have here is that the Natural Selections facility is still under investigation.”

He said all the spinach implicated in the E. coli outbreak had been traced to Natural Selection Foods. Many of the bags had been sold under the Dole brand name.

Acheson said food growers and processors will have to change some of their practices, although it is not yet clear which ones.

“The FDA and the state of California have previously expressed serious concerns with continuing outbreaks of foodborne illness associated with the consumption of fresh and fresh-cut lettuce and other leafy greens,” Acheson said.

“And as part of our longer term strategy, FDA and the state of California expect industry to develop a plan to minimize the risk of a further outbreak of E. coli 0157 not just in spinach but in all leafy greens including lettuce.”

Focus on California
He said this was the 20th outbreak of E. coli 0157:H7 in leafy greens in 10 years, and half had been traced to central California.

“What it does is it raises concerns about what is going on in that environment,” Acheson said.

For instance, cattle may need to be kept away from fields where food is grown, and physical barriers may have to be used, he said.

E. coli is a common and usually harmless bacteria found in the guts of animals including people. The 0157:H7 strain can be toxic and is found in the intestines and manure of cattle.

“Having cattle that may or may not be carrying 0157 that are uphill and upstream of a field that is growing a fresh product that is going to be consumed without cooking obviously raises concerns and questions,” Acheson said.

==========
September 15, 2006; NY Times

W.H.O. Rules May Increase DDT Use for Malaria
By THE ASSOCIATED PRESS

WASHINGTON -- The World Health Organization on Friday called on more developing countries, particularly in Africa, to begin spraying the controversial pesticide DDT to fight malaria.

The difference: DDT, longed banned in the United States because of environmental damage, is no longer sprayed outdoors. Instead it's used to coat the inside walls of mud huts or other dwellings and kill mosquitoes waiting to bite families as they sleep.

A small number of malaria-plagued countries already use DDT, backed by a 2001 United Nations treaty that set out strict rules to prevent environmental contamination. But the influential WHO's long-awaited announcement makes clear that it will push indoor spraying with a number of insecticides -- and that DDT will be a top choice because when used properly it's safe, effective and cheap.

''We must take a position based on the science and the data,'' said Dr. Arata Kochi, the WHO's malaria chief. ''One of the best tools we have against malaria is indoor residual house spraying. Of the dozen insecticides WHO has approved as safe for house spraying, the most effective is DDT.''

''It's a big change,'' said biologist Amir Attaran of Canada's University of Ottawa, who has long pushed for the guidelines and described a recent draft. ''There has been a lot of resistance to using insecticides to control malaria, and one insecticide especially. ... That will have to be re-evaluated by a lot of people.''

The U.S. government already has decided to pay for DDT and other indoor insecticide use as part of President Bush's $1.2 billion, five-year initiative to control malaria in Africa.

Kochi has positioned indoor spraying as an important but neglected third weapon -- along with insecticide-treated bed nets and new medications -- in the war on malaria, which infects half a billion people each year and kills more than 1 million, most of them children.

While some well-known environmental groups have signed on to WHO's decision, it has generated some concern from groups like the Pesticide Action Network, which says there are questions about its effects on developing children.

But proponents argue that until better strategies are developed, carefully controlled DDT use is warranted because in recent years, nothing else has succeeded in lowering deaths from malaria.

''Indoor spraying is like providing a huge mosquito net over an entire household for around-the-clock protection,'' said Sen. Tom Coburn, R-Okla., a physician who has urged stronger international anti-malaria programs.

DDT is easily history's most notorious insecticide. While it isn't classified a human health hazard, it was banned in the U.S. in 1972 after decades of widespread agricultural spraying led to environmental damage around the globe.

DDT never disappeared in developing countries, although political pressure and lack of funding meant few continued to use it. Then a 2001 United Nations treaty that aims to wipe out a dozen of the world's most dangerous chemicals carved out one exception for DDT: indoor anti-malaria spraying, under strict conditions to prevent environmental contamination.

Why? When small amounts are sprayed on interior walls, DDT forms a residue that both repels mosquitoes -- discouraging them from flying into the house -- and kills those that rest on the walls, explained Clive Shiff, a professor at Johns Hopkins University's Malaria Research Institute. It has to be applied only about once a year.

Bednets soaked in different insecticides already are used to protect sleeping families. But if the nets are torn or aren't used every night, a mosquito can infect someone. Plus, mosquitoes can develop resistance to those nets' chemicals, Shiff added, pointing to a 2002 malaria outbreak in part of South Africa using bednets. DDT in those houses quelled the outbreak.

''It would be naive to say DDT is a magic bullet for malaria. It isn't,'' stressed Attaran. It won't work in some places where mosquitoes already are resistant to a range of insecticides, he noted. He suspects DDT will be of most use in eastern Africa, where that problem hasn't yet emerged.

Attaran called for research ''to make sure we're using insecticides and DDT not in a willy-nilly way but in an optimal way in the right places.''

Nor, scientists cautioned, is indoor spraying alone a solution, as mosquitoes bite everywhere. Countries are being encouraged to adopt comprehensive malaria programs that also include newer, more effective medications, as Bush's malaria chief, Adm. R. Timothy Ziemer, was to outline Friday.

''President Bush has directed Admiral Ziemer to use the most safe and effective tools available to control and combat malaria in Africa,'' said White House spokeswoman Emily Lawrimore. Indoor spraying ''programs are an important part of his Presidential Malaria Initiative to save thousands of people from a highly treatable and preventable disease.''

==========

Gene-Altered Profit-Killer
A Slight Taint of Biotech Rice Puts Farmers' Overseas Sales in Peril

By Rick Weiss
Washington Post, September 21, 2006

The disclosure last month that American long-grain rice has become widely contaminated with traces of an experimental, gene-altered rice has provoked an economic crisis for farmers and reignited a long-smoldering debate over the adequacy of U.S. oversight of biotech food.

Already, Japan has banned U.S. long-grain imports, noting, as have other countries, that the genetically altered variety never passed regulatory muster. Stores in Germany, Switzerland and France have pulled American rice off their shelves. And at least one ship last week remained quarantined in Rotterdam, awaiting word of whether its contents would be diverted or destroyed.

"Until this happened, it looked like rice farmers were finally going to make a profit this year," said Greg Yielding, executive director of the Arkansas Rice Growers Association. Instead, U.S. rice prices have slumped about 10 percent, and some expect market losses to reach $150 million.

Scientists are just now figuring out how LLRICE601 made its way into the nation's commercial rice supply. The company that developed it, Bayer CropScience of Research Triangle Park, N.C., says it abandoned the project in 2001.

The unapproved rice poses no threat to human or animal health, federal officials have assured the public. And the level of contamination is minuscule, on the order of just six genetically engineered grains in every 10,000.

But the growing economic fallout from LL601's unwanted and illegal reappearance -- including a handful of lawsuits against Bayer -- is a reminder that when it comes to food, public perception is as important as scientific assurances.

"We've been warning for years that something like this could happen," Yielding said, citing a December 2005 report from the Agriculture Department's inspector general that lambasted the government for not keeping a closer eye on companies developing new crops. "This is one of those deals where you hate to be right."

Genetically engineered crops are common in the United States, where 60 to 90 percent of the corn, soybean and cotton plants are enhanced with genes from bacteria and other organisms. Most of the added genes allow the plants to make their own insecticides or, as in LLRICE601, confer resistance to commonly used weedkillers.

But motivated by scientific, cultural and economic concerns, most countries around the world are finicky about biotech crops and allow relatively few in. That, in turn, has created tension for U.S. agriculture.

Although U.S. farmers say they favor, in theory, further development of the crops, many have called for delays in field testing or marketing until other countries agree to accept them. With few mechanisms in place to segregate engineered from conventional varieties, and wide availability of tests able to detect minute quantities of foreign DNA, they say it is not worth the risk that shipments will become contaminated and rejected.

"Once it's in the pipeline, it's very hard to get it out," said Jeffrey Barach, a vice president at the Food Products Association, a D.C. trade group.

Concerns have been especially high among rice growers, who sell big portions of their harvests to Kellogg for Rice Krispies, Anheuser-Busch for beer and Gerber for baby food, said Eric Wailes, an agricultural economist at the University of Arkansas at Fayetteville.

"These are companies with huge brand equity," Wailes said, and are unwilling to risk their reputations.

In fact, many experts suspect that pressure from the food industry was a major reason why Bayer mysteriously dropped LL601 five years ago without seeking USDA approval for it. The company has refused to answer questions about its biotech rice program, which produced two other varieties. The Agriculture Department deemed those two safe for sale, but Bayer opted not to market them.

In recent weeks, tests by researchers in Texas, Arkansas and Louisiana have begun to unveil how LL601 persisted even after Bayer quit. The rice had been grown in several test locations, including Louisiana State University's rice research station near Crowley from 1999 to 2001.

Analyses in the past two weeks of samples of other rice varieties that were grown over the years at the same research station found that at least one -- a long-grain rice known as Cheniere -- was contaminated with LL601 at least as far back as 2003.

Records indicate that the affected plot of Cheniere rice, which was used to grow "foundation stock" from which much larger amounts were produced over the next few years, was located at least 160 feet from the LL601 plot, farther apart than what USDA required, said LSU spokeswoman Frankie Gould.

Exactly how and when the crossover of the genetically altered rice occurred remains uncertain. It could be, experts said, that some grains of LL601 got mixed inadvertently with grains of Cheniere, so that future plantings of Cheniere were really plantings of both. That could have gone unnoticed for years until someone tested for the errant gene -- which is how Riceland Foods Inc. of Stuttgart, Ark., happened upon the problem this year.

Or it may be that LL601 plants fertilized some Cheniere plants, creating a gene-enhanced Cheniere. Rice pollen does not usually go far afield, but it can.

Tests on more than a dozen other LSU varieties have come up negative for the LL601 gene, as have tests from Texas and Arkansas plots; results from Mississippi are pending. But because many varieties of rice are mixed in huge bins after harvest, it could be difficult to rid the U.S. rice crop of the illegal variety.

"The damage has been done and it is still being done," said Adam J. Levitt, a partner in the Chicago office of Wolf Haldenstein Adler Freeman & Herz LLC, who led a class action lawsuit that won $110 million for farmers after gene-altered and unapproved StarLink corn appeared in food in 2000. "They've really in a very substantial way poisoned the well."

How Bayer will deal with the international ramifications of LL601's escape is uncertain. But its domestic strategy became clear on Aug. 18, the day Agriculture Secretary Mike Johanns announced the problem. That day Bayer filed a petition seeking USDA approval -- or "deregulation" -- of LL601.

If the petition is successful, the variety's presence would no longer violate U.S. regulations -- but the strategy has raised some hackles.

"Post hoc approval strikes us as really cynical," said Bill Freese, science policy analyst for the District-based Center for Food Safety. "Bayer has no intention of bringing this rice to market. Clearly this is an effort to avoid liability."

Last week Freese's group filed a petition asking USDA to reject Bayer's request and to rescind its earlier approval of the company's other two engineered rice varieties.

The petition argues that the herbicide resistance trait is sure to make its way into red rice, a weedy wild relative of white rice that is already rice growers' biggest pest. Any advance likely to make red rice herbicide-resistant, the petition claims, would force farmers to turn to more potent weedkillers and violate the Plant Protection Act.

Even if Bayer succeeds in deregulating LL601, farmers will still face international rejection -- a potentially major hit, since most rice profits are from overseas sales.

On Friday the European Commission said the rice "is not likely to pose an imminent safety concern." But it also made plain that the rice is illegal and offered no hints it would soften its stance.

Of even greater concern is whether Central American nations -- the biggest foreign buyers of U.S. rice -- and Mexico, the second biggest, will adhere to their strict rules on engineered foods. Talks were underway late last week, Yielding said.

The December inspector general report scolded USDA's Animal and Plant Health Inspection Service for failing to conduct required inspections of test plots and in some cases not even knowing where experiments it had approved were being conducted.

APHIS spokeswoman Rachel Iadicicco said the shortcomings cited in that report have been remedied.


==========
September 15, 2006; NY Times

EU: Biotech Rice Illegal but Likely Safe
By THE ASSOCIATED PRESS

BRUSSELS, Belgium -- Genetically modified rice illegally imported into Europe is unlikely to pose any safety concerns to humans or animals, but must still be recalled, the European Commission said Friday.

Philip Tod, consumer protection spokesman for the European Union, said a European food safety agency had conducted tests on the rice.

Earlier this week, the commission said 33 out of 162 samples of rice imports to Europe contained genetically modified strains in violation of an EU ban on such imports. The strain in question, Liberty Link Rice 601, is also not approved for human consumption in the United States.

Liberty Link Rice 601 was developed by Aventis CropScience, which was taken over by Germany's Bayer AG in 2002 and renamed Bayer Crop Science. Bayer announced in July it had found the 601 strain in storage units in Arkansas and Missouri. Since then, the EU has tightened screening to stop the product from entering its market.

Environmental group Greenpeace reported evidence of the tainted rice in German supermarkets Monday. It also said it found genetically modified rice coming from China.

EU regulators are in contact with Greenpeace, Tod said.

''The commission ... still must verify these reports and is requesting further information from national authorities,'' Tod said. ''The commission also urged national governments and the rice industry to intensify their product testing.''

==========
Another Supplier Recalls Spinach
The move comes as FDA warns consumers not to eat any fresh forms or products
containing it.

By Deborah Schoch, Rong-Gong Lin II and Howard Blume
LA Times; September 18, 2006

Another packager recalled three brands of its fresh spinach products Sunday
as a widening national E. coli outbreak was linked to seven more illnesses
and left spinach farmers and vendors with wasted crops and empty shelves.

The number of confirmed E. coli cases associated with spinach rose to 109
people in 19 states; 55 victims have been hospitalized and a 77-year-old
woman died in Wisconsin on Sept. 7.

"This is unquestionably a significant outbreak," said Dr. David Acheson,
chief medical officer of the FDA's food safety division. "It is certainly
one of the larger ones in the United States; there's no question about
that."

Salinas-based River Ranch Fresh Foods, one of the nation's top five produce
processors, was recalling three of its spring mix salad brands Sunday that
include spinach: Farmers Market, Hy Vee, and Fresh and Easy, Acheson said in
a conference call.

Robert Jenkins, president and CEO of River Ranch said Sunday evening he was
confident that the source of the contamination will be found. "We are not
aware of any illnesses that have been linked to the consumption of spring
mix," he said. "We're obviously very supportive of the work the FDA is
doing."

The River Ranch products were distributed to customers in Iowa, Texas and
New Mexico.

"I'm confident we're going to figure this one out. There's just too much
talent, too many people, not to figure this out and regain the confidence of
consumers," Jenkins said.

The company buys in bulk from Natural Selection Foods, one of the nation's
largest producers of organic produce. Since last week, Natural Selection has
been the primary focus of the investigation into the source of the outbreak,
because many of those sickened apparently ate its packaged spinach. However
E. coli has not been found in the company's bags of spinach, and health
officials have said others could be implicated. Natural Selection issued its
own recall of 31 brand names.

The recalls come as the FDA has warned consumers not to eat any fresh
spinach or products containing it until further notice. Erring on the side
of caution, officials did not recommend cooking the fresh greens. Canned and
frozen spinach are not included in the warning.

Acheson said the number of illnesses could climb this week as labs continue
testing for the E. coli strain known as O157:H7. The particularly virulent
strain can cause bloody diarrhea and cramps and can trigger a rare
complication leading to kidney failure.

The bacteria can be found in the manure of cattle and some other grazing
animals, which can harmlessly carry the strain in their intestines. It can
be passed to humans when they ingest the bacteria in contaminated produce.

Over the weekend, federal and state investigators continued to pore over
records at Natural Selection headquarters in San Juan Bautista, Calif.,
hoping to trace the outbreak to its source.

California's food emergency response team today will head to farms that
supplied the suspect spinach, reviewing their growing and harvesting
practices, Acheson said.

Across the Salinas Valley, the heart of spinach country, farmers are
increasingly anxious. California produces nearly three-quarters of the
nation's spinach.

Dale Huss, vice president of production at Ocean Mist, which does not grow
for Natural Selection, was among the few spinach growers willing to speak
openly about his plight.

At an Ocean Mist field in Castroville on Sunday, Huss pulled up a fistful of
spinach leaves and took a bite.

"Nothing wrong with it," he said, chewing slowly. "Gorgeous, really. It's
good."

Huss expects that in the next few days, he will dig up this 20-acre expanse,
an $80,000 investment.

"We can't wait. We'll essentially have to put a disk in this," Huss said,
referring to a machine that will chop the spinach and turn it back into the
soil. "We can't hold on."

Huss may wait a few days, hoping against hope that the scare will pass, but
time is against him. Within a week, the spinach will get long and dog-eared,
and then start to yellow.

"We're running up against Mother Nature," Huss said.

He doubts he could sell his crop for freezing, since that market probably is
inundated, he said.

Huss recalled how the phone began ringing before 6 a.m. Friday as clients
began canceling spinach orders less than 24 hours after the initial warning.
By 9 a.m., he sent about 100 workers home.

"No sense in putting spinach in a box if no one's going to buy."

At the consumer end of the food chain, spinach was hard to find.

"We just pulled all our spinach because customers aren't going to buy it now
anyway," said Cathy Dominguez, a seller at the Sunday farmer's market in
Hollywood. "Everybody's pretty scared and nervous. So it's easier for us
just not to bring it."

On Saturday she lost about $420 in sales at the Pasadena farmers market.

Her customers Sunday included Fred Eric, the chef/owner of Tiara Cafe in Los
Angeles. He's been fielding e-mails from customers who want to know two
things: "Where are you getting your spinach from? And what are you going to
do?"

For one thing, he's replaced the spinach in his $3.50-quiche slices with
arugula. And spinach has been thrown out of the Ty Cobb Freshwich, a
sub-like concoction in a rice noodle roll.

Half a block away, Allyson McBayne was doing brisk business because of her
spin on spinach: It's hydroponic — grown in water behind a home in Reseda,
which was enough to reassure customers. Only one shopper, she said, made a
point of shunning her spinach.

Despite the warnings, Arturo Reyes of McGrath Farms set out his normal
complement of spinach, though he judged business a little slow.

Brett Gathrid and Jennifer Yandell of Hancock Park approached the spinach
with confusion. Yandell, a recent arrival from Nashville, paused then
reached for the greens before Gathrid stopped her.

"Our confusion is that they haven't said exactly what and where the problem
is," Gathrid explained.

"I was going to buy it," complained Yandell.

"I wouldn't let her buy it," Gathrid said.

Angela Gygi of Beachwood Canyon had no such qualms: "I'm not terribly
concerned because I buy my produce from farmers, and I think they take good
care of it."

And chef Sandy Gendel, on a $2,000 shopping spree for Pace, in Laurel
Canyon, took a reporter's query as a reminder to buy the otherwise shunned
produce. "I almost forgot. Arturo, where's your spinach?"

Although the FDA has not placed restrictions on selling spinach, it was
nowhere to be found at a Vons near Los Feliz.

The tag marking it as a sale item was still in place below an empty shelf.
Like other markets, Vons was refunding money for all spinach, no questions
asked.

Trader Joe's in Silver Lake also was a spinach-free zone. One manager
ruefully noted the benefits of all the vitamins in spinach: "That's why I
only buy spinach."

Across the street, at Gelson's Market, assistant manager Manny Vong had
accepted three packages of returned spinach on his shift.

Some customers have been returning half-finished bags.

Santi Reng, of the produce department, said one of his customers had just
finished eating a raw spinach concoction with dinner guests when they saw
the alert on television.

The customer is saving the empty bag as evidence, just in case.
----------
September 15, 2006; NY Times

F.D.A. Warns Against Eating Bag Spinach
By GARDINER HARRIS

WASHINGTON, Sept. 14 — Consumers should avoid eating fresh bagged spinach
after an outbreak of E. coli in eight states killed one person and sickened
at least 49, federal health officials announced Thursday night.

The outbreak involves a virulent strain of E. coli known as 0157:H7, which
produces a toxin that can lead to bloody diarrhea, kidney failure and, in
rare cases, death.

State and federal health officials have used genetic screening tools to
confirm that all 50 people sickened by the disease suffered from the same
bacteria, said Dr. David Acheson of the Center for Food Safety and Applied
Nutrition at the F.D.A.

But health officials still have no idea which food manufacturer may be to
blame. The first case was reported on Aug. 23 and the most recent on Sept.
3, Dr. Acheson said.

“It’s increasing by the day,” Dr. Acheson said. “We may be at the peak, we
may not. We’re giving preliminary data here.”

Dr. Acheson said the F.D.A. became aware of a possible outbreak on
Wednesday. But delays are common as information is gathered and compared, he
said.

“It takes quite some time for someone to be exposed, get sick, get sick
enough to see the doctor, have it examined, have a sample sent to a lab,
have it confirmed positive and have it be put in the public health system,”
Dr. Acheson said.

Dr. Acheson described the outbreak as “significant.” It is broadly
distributed across the country. Twenty cases — including the only confirmed
death — occurred in Wisconsin. There were 11 cases in Utah, 5 in Oregon, 4
in Indiana, 3 each in Idaho and Michigan, 2 in New Mexico and 1 in
Connecticut, he said.

Most of those affected have been women. Although this strain of E. coli
commonly affects children, many patients have been older than 20, Dr.
Acheson said.

Health officials are by no means certain that bagged spinach is the culprit.
When patients have a confirmed case of the disease, health officials ask the
victims many questions about what they ate over the previous weeks. Bagged
fresh spinach is the only food that patients so far have had in common, Dr.
Acheson said.

Asked if consumers should also avoid bagged salads, Dr. Acheson answered
somewhat tentatively, saying, “At this point, there is nothing to implicate
bagged salad.”

E. coli 0157:H7 is a dangerous strain of a type of bacteria that live in the
intestines of humans and other animals. There are hundreds of E. coli
strains, most of them harmless, but 0157:H7 makes a toxin that can cause
severe illness — bloody diarrhea, anemia and, in 2 percent to 7 percent of
cases, kidney failure. Children under 5 and the elderly are the most likely
to become gravely ill.

The Centers for Disease Control and Prevention estimates that the 0157:H7
strain causes 73,000 infections and 61 deaths a year in the United States.

The bacteria can live in cows’ intestines without making the animals sick,
and most infections in people come from eating undercooked hamburgers
(cooking to at least 160 degrees Fahrenheit destroys the bacteria and the
toxin they produce). In 2002, 19 million pounds of raw beef were recalled
because of 0157:H7 contamination.

In a notorious outbreak in 1993, four children died from the infection after
eating contaminated Jack in the Box hamburgers. Raw milk and unpasteurized
cheese can also spread the bacteria. Outbreaks have been linked to petting
zoos where children touched farm animals that carried the bacteria.

Produce can also become contaminated by animal wastes or unsanitary water,
and outbreaks have been caused by sprouts, lettuce and unpasteurized fruit
juice or cider. In 1996, one child died and 66 others became ill after
drinking unpasteurized Odwalla apple juice.

Thorough washing should make it safe to eat most produce raw, except for
alfalfa sprouts.

But Dr. Acheson advised consumers to avoid bagged spinach altogether,
although he noted that thorough cooking killed the bacteria.

==========
Press Release: September 14, 2006
U.S. Department of Energy

The First Tree Genome is Published
Poplar Holds Promise as Renewable Bioenergy Resource

WALNUT CREEK,  CA--Wood from a common tree may one day factor prominently in meeting transportation fuel needs, according to scientists whose research on the fast-growing poplar tree is featured on the cover of tomorrow's edition of the journal Science.

The article, highlighting the analysis of the first complete DNA sequence of a tree, the black cottonwood or Populus trichocarpa, lays the groundwork that may lead to the development of trees as an ideal "feedstock" for a new generation of biofuels such as cellulosic ethanol. The research is the result of a four-year scientific and technical effort, led by the U.S. Department of Energy's Joint Genome Institute (DOE JGI) and Oak Ridge National Laboratory (ORNL), uniting the efforts of 34 institutions from around the world, including the University of British Columbia, and Genome Canada; Umeå Plant Science Centre, Sweden; and Ghent University, Belgium.

"Biofuels could provide a major answer to our energy needs by giving the United States a homegrown, environmentally friendlier alternative to imported oil," said DOE's Under Secretary for Science Dr. Raymond L. Orbach. "Fine-tuning plants for biofuels production is one of the keys to making biofuels economically viable and cost-effective. This research, employing the latest genomic technologies, is an important step on the road to developing practical, biologically-based substitutes for gasoline and other fossil fuels."

"Biofuels are not only attractive for their potential to cut reliance on oil imports but also their reduced environmental impact," said Dr. Gerald A. Tuskan, ORNL and DOE JGI researcher and lead author of the Science study. "Biofuels emit fewer pollutants than fossil fuels such as gasoline. In addition, poplar and related plants are vital managers of atmospheric carbon. Trees store captured carbon dioxide in their leaves, branches, stems, and roots. This natural process provides opportunities to improve carbon removal from the air by producing trees that effectively shuttle and store more carbon below ground in their roots and the soil. Moreover, bioenergy crops re-absorb carbon dioxide emitted when biofuels are consumed, creating a cycle that is essentially carbon neutral."

Poplar's extraordinarily rapid growth, and its relatively compact genome size of 480 million nucleotide units, 40 times smaller than the genome of pine, are among the many features that led researchers to target poplar as a model crop for biofuels production.

"Under optimal conditions, poplars can add a dozen feet of growth each year and reach maturity in as few as four years, permitting selective breeding for large-scale sustainable plantation forestry," said Dr. Sam Foster of the U.S. Forest Service. "This rapid growth coupled with conversion of the lignocellulosic portion of the plant to ethanol has the potential to provide a renewable energy resource along with a reduction of greenhouse gases."

"The challenge of global warming requires global solutions," said Martin Godbout, President, Genome Canada. "The international consortium that successfully sequenced the poplar genome provides a model for great minds working together and serves as an example of how discovery science can be applied to current environmental problems facing humanity."

Among the major discoveries yielded from the poplar project is the identification of over 45,000 protein-coding genes, more than any other organism sequenced to date, approximately twice as many as present in the human genome (which has a genome six times larger than the poplar's). The research team identified 93 genes associated with the production of cellulose, hemicellulose and lignin, the building blocks of plant cell walls. The biopolymers cellulose and hemicellulose constitute the most abundant organic materials on earth, which by enzymatic action, can be broken down into sugars that in turn can be fermented into alcohol and distilled to yield fuel-quality ethanol and other liquid fuels.

Poplar is the most complex genome to be sequenced and assembled by a single public sequencing facility and only the third plant to date to have its genome completely sequenced and published. The first, back in 2000, was the tiny weed, Arabidopsis thaliana, an important model for plant genetics. Rice was the second, two years ago. Populus trichocarpa is one of the tallest broadleaf hardwood trees in the western U.S., native to the Pacific coast from San Diego to Alaska. The sequenced DNA was isolated from a specimen collected along the banks of the Nisqually river in Washington  State.

The poplar project supports a broader DOE drive to accelerate research into biofuels production, under the Bush Administration's Advanced Energy Initiative. In August, the department announced it would spend $250 million over five years to establish and operate two new Bioenergy Research Centers. The DOE-supported research into biofuels is focusing on both plants and microbes, in an effort to discover new biotechnology-based methods of producing fuels from plant matter (biomass) cost-effectively.

Earlier this year, DOE published a study summarizing the views of over fifty leading scientists in the field of biofuels research that expressed optimism about the prospects for finding cost-effective methods to produce fuels such as ethanol from cellulose in the not-too-distant future (Breaking the Biological Barriers to Cellulosic Ethanol <http://genomicsgtl.energy.gov/biofuels/b2bworkshop.shtml> ). Secretary of Energy Samuel W. Bodman has set a departmental goal of replacing 30 percent of current transportation fuel demand with biofuels by 2030.

DOE scientists envision a future where vast poplar farms in regions such as the Pacific Northwest, the upper Midwest, and portions of the southeastern U.S. could provide a steady supply of tree biomass rich in cellulose that can be transformed by specialized biorefineries into fuels like ethanol. Other regions of the country might specialize in different "energy crops" suited to their particular climate and soil conditions, including such plants as switchgrass and willow. In addition, a large quantity of biofuels might be produced from agricultural and forestry waste.

A 2005 joint study by DOE and the U.S. Department of Agriculture found that the United States has enough agricultural and forestry land to support production of over one billion tons of biomass, which could provide enough liquid biofuels to replace over a third of current transportation fuel consumption, and still continue to meet food, feed, and export demands (Biomass as Feedstock for a Bioenergy and Bioproducts Industry: The Technical Feasibility of a Billion-Ton Annual Supply <http://feedstockreview.ornl.gov/pdf/billion_ton_vision.pdf> ).

The DOE Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories, Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest, along with the Stanford Human Genome Center to advance genomics in support of the DOE mission related to clean energy generation and environmental characterization and clean-up. DOE JGI's Walnut Creek, Calif. Production Genomics Facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.

==========
Mich. Bill Would Require Cancer Shots
Michigan Legislation Would Require Girls to Be Vaccinated Against Cervical
Cancer

By DAVID EGGERT
The Associated Press
ABCNEWS.com; 9/13/06

LANSING, Mich. - Michigan girls entering the sixth grade next year would
have to be vaccinated against cervical cancer under legislation backed
Tuesday by a bipartisan group of female lawmakers.

The legislation is the first of its kind in the United States, said
Republican state Sen. Beverly Hammerstrom, lead sponsor.

The vaccine was approved by the Food and Drug Administration in June for use
in girls and women and has been hailed as a breakthrough in cancer
prevention. It prevents infections from some strains of the sexually
transmitted human papilloma virus, which can cause cervical cancer and
genital warts.

A government advisory panel said that ideally the vaccine should be given
before girls become sexually active.

The American Cancer Society estimates 9,700 women nationwide will be
diagnosed with cervical cancer in 2006, and 3,700 will die.

"We believe we can save the lives of these girls," Hammerstrom said.

Some conservatives around the country have expressed concern that schools
would make the vaccine a requirement for enrollment. They have argued that
requiring the vaccine would infringe on parents' rights and send a message
that underage sex is OK.

The three-shot vaccination costs $360. Hammerstrom said most Michigan
employers will cover the vaccine, and said uninsured girls could be covered
through the federal government's Vaccines for Children program.

==========
September 8, 2006; Howard Hughes Medical Institute News
Focusing in on Cancer's Complexity

In the first large-scale screen of genetic changes in cancer cells,
researchers have found that a typical breast or colorectal tumor results
from mutations in about 90 genes, with different sets of mutations producing
the same type of cancer. But the many different genetic routes to malignancy
share common features that point toward new means of cancer prevention,
diagnosis, and treatment.

Previous genetic studies of cancer have concentrated on specific genes or on
chromosomal regions. In the September 8, 2006, issue of Science, Howard
Hughes Medical Institute (HHMI) investigators Bert Vogelstein at Johns
Hopkins University and Sanford D. Markowitz at Case Western Reserve
University School of Medicine, together with a team of researchers from The
Kimmel Cancer Center at Johns Hopkins and other institutions, report on a
radically new way of identifying genes involved in cancer.

They screened the most well-annotated human genes, a total of more than
13,000 genes that all major genomic centers agree encode proteins. They
first looked for mutations in 22 cancerous breast and colorectal tumors.
From that list, 191 genes appeared to be particularly important. “Scientists
who have seen these data have told us that it keeps them up all night
thinking,” said Vogelstein. “It will hopefully open up a large number of
opportunities in many areas of cancer research.”

The team found far more mutated genes in tumor cells than they had expected.
The average breast or colorectal cancer cell was predicted to have an
average of 90 mutations that alter protein structure. However, not all 90
were likely to contribute equally to the development of cancers. Through
subsequent validation studies, the researchers identified an average of 11
genes in each cancer that were most likely to be directly responsible for
its biologic properties. Extrapolating to the total number of genes in the
human genome, an average of about 17 genes are expected to have critical
involvement in the development of each cancer.

The researchers also were surprised by the heterogeneity of the cancers.
Different genes were mutated in cancers of the same type, and the genes
contributing to breast cancer were different from those mutated in
colorectal cancers. “It presents a whole new view of the neoplastic
process,” said Vogelstein, “and explains the heterogeneity that clinicians
have long noted to exist among cancer patients.”

Despite the complexity of the results, a closer examination of the data has
started to reveal an underlying order. Many of the genes that are mutated
are involved in pathways thought to be important in cancer, such as cell
adhesion, movement, and signaling. Each of these pathways relies on multiple
genes, and flaws in any of the genes in a pathway may have similar
consequences.

“By taking a systems biology approach to connect these genes, we suspect
that the complexity will be less than it appears at first sight,” said
Vogelstein. “The same 10 or 20 pathways may be altered in every cancer,
though the particular mutated genes in these pathways will be different. The
picture will become much clearer as the function of these genes and the ways
they interact are better worked out.”

This kind of study could not have been done a few years ago, said Tobias
Sjöblom, an HHMI research associate in Vogelstein's lab, who is the lead
author of the Science article. But the availability of the human genome
sequence and improvements in sequencing and bioinformatics technologies have
made it possible to examine the genome of cancer cells in a comprehensive
and unbiased manner, he said.

Still, a massive amount of work was involved. “It was a straightforward
process once all the mechanistic details had been worked out and the
bioinformatic infrastructure was in place,” said Sjöblom, “but very
laborious.” The research team formulated 135,483 sets of DNA primers for the
polymerase chain reactions needed to sequence the tumor cell genes. They
then looked at 11 tumors for each type of cancer, along with two normal
samples as a control. The result was almost a half billion letters of DNA
sequence that had to be screened for suspicious mutations.

Successive rounds of computer analysis focused attention on smaller and
smaller subsets of nucleotides. “The hard work was to remove all the junk so
that you were left with the true mutatio